SLN-Breast | Breast Metastases to Axillary Lymph Nodes
DOI: 10.7937/tcia.2019.3xbn2jcc | Data Citation Required | Image Collection
| Location | Species | Subjects | Data Types | Cancer Types | Size | Status | Updated |
|---|---|---|---|---|---|---|---|
| Breast | Human | 78 | Histopathology | Breast Cancer | Public, Complete | 2019/07/18 |
Summary
The detection of breast cancer metastases to lymph nodes is of great prognostic value for patient treatment. Using machine learning to detect metastatic breast cancer to lymph nodes can increase efficiency of pathologist diagnosis and ultimately ensure patients are accurately staged for prospective treatment. This dataset allows for the objective comparison of breast cancer metastases detection algorithms.
The dataset consists of 130 de-identified whole slide images of H&E stained axillary lymph node specimens from 78 patients. Metastatic breast carcinoma is present in 36 of the WSI from 27 patients. No patient inclusion/exclusion criteria were followed. No slide inclusion/exclusion criteria were followed. The slides were scanned at Memorial Sloan Kettering Cancer Center (MSKCC) with Leica Aperio AT2 scanners at 20x equivalent magnification (0.5 microns per pixel). Together with the slides, the class label of each slide, either positive or negative for breast carcinoma, is given. The slide class label was obtained from the pathology report of the respective case.
Data Access
Version 1: Updated 2019/07/18
| Title | Data Type | Format | Access Points | Subjects | License | |||
|---|---|---|---|---|---|---|---|---|
| Slide Images | Histopathology | SVS | Download requires IBM-Aspera-Connect plugin |
78 | 130 | CC BY 3.0 | ||
| Supplemental Data | CSV | CC BY 3.0 |
Citations & Data Usage Policy
Data Citation Required: Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution must include the following citation, including the Digital Object Identifier:
Data Citation |
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Campanella, G., Hanna, M. G., Brogi, E., & Fuchs, T. J. (2019). Breast Metastases to Axillary Lymph Nodes [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/tcia.2019.3xbn2jcc |
Detailed Description
Explanation of target.csv files
target.csv contains a binary label for each slide image in the dataset.
- target=1 means that the image contains breast cancer metastases.
- target=0 means that the image does not contain breast cancer metastases.
Other Publications Using this Data
TCIA maintains a list of publications which leverage TCIA data. If you have a manuscript you’d like to add please contact TCIA’s Helpdesk.
Publication Citation |
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Campanella, G., Hanna, M. G., Geneslaw, L., Miraflor, A., Werneck Krauss Silva, V., Busam, K. J., Brogi, E., Reuter, V. E., Klimstra, D. S., & Fuchs, T. J. (2019). Clinical-grade computational pathology using weakly supervised deep learning on whole slide images. Nature Medicine (Vol. 25, Issue 8, pp. 1301–1309). Springer Science and Business Media LLC. https://doi.org/10.1038/s41591-019-0508-1 |
TCIA Citation |
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Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7 |