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PANCREAS-CT

Pancreas-CT | Pancreas-CT

DOI: 10.7937/K9/TCIA.2016.tNB1kqBU | Data Citation Required | Image Collection

Location Species Subjects Data Types Cancer Types Size Supporting Data Status Updated
Pancreas Human 82 CT Healthy Controls (non-cancer) 9.95GB Image Analyses Public, Complete 2020/09/10

Summary

The National Institutes of Health Clinical Center performed 82 abdominal contrast enhanced 3D CT scans (~70 seconds after intravenous contrast injection in portal-venous) from 53 male and 27 female subjects.  Seventeen of the subjects are healthy kidney donors scanned prior to nephrectomy.  The remaining 65 patients were selected by a radiologist from patients who neither had major abdominal pathologies nor pancreatic cancer lesions.  Subjects' ages range from 18 to 76 years with a mean age of 46.8 ± 16.7. The CT scans have resolutions of 512x512 pixels with varying pixel sizes and slice thickness between 1.5 − 2.5 mm, acquired on Philips and Siemens MDCT scanners (120 kVp tube voltage).

A medical student manually performed slice-by-slice segmentations of the pancreas as ground-truth and these were verified/modified by an experienced radiologist.

Data Access

Version 2: Updated 2020/09/10

Note: Previously posted cases #25 and #70 were found to be from the same scan as case #2, just cropped slightly differently, and were removed from this version of the dataset.

Title Data Type Format Access Points Subjects Studies Series Images License
Images CT DICOM
Download requires NBIA Data Retriever
80 80 80 18,942 CC BY 3.0
Manual Annotations ZIP CC BY 3.0

Additional Resources for this Dataset

The NCI Cancer Research Data Commons (CRDC) provides access to additional data and a cloud-based data science infrastructure that connects data sets with analytics tools to allow users to share, integrate, analyze, and visualize cancer research data.

  • Imaging Data Commons (IDC) (Imaging Data)
  • Citations & Data Usage Policy

    Data Citation Required: Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution must include the following citation, including the Digital Object Identifier:

    Data Citation

    Roth, H., Farag, A., Turkbey, E. B., Lu, L., Liu, J., & Summers, R. M. (2016). Data From Pancreas-CT (Version 2) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/K9/TCIA.2016.tNB1kqBU

    Detailed Description

    Data Example

    Note

    The DICOM files were created from anonymized volumetric images (Analyze and NifTI) using this from ITK: http://www.itk.org/Doxygen/html/Examples_2IO_2ImageReadDicomSeriesWrite_8cxx-example.html .

    Other Publications Using this Data

    TCIA maintains a list of publications that leverage TCIA data. If you have a manuscript you’d like to add please contact the TCIA Helpdesk. Below is a list of such publications using this Collection:

    • Gibson, E., Giganti, F., Hu, Y., Bonmati, E., Bandula, S., Gurusamy, K., . . . Barratt, D. C. (2017). Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. Paper presented at the International Conference on Medical Image Computing and Computer-Assisted Intervention.
    • Greenspan, H., van Ginneken, B., & Summers, R. M. (2016). Guest Editorial Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique. IEEE Transactions on Medical Imaging, 35(5), 1153-1159. doi:10.1109/TMI.2016.2553401
    • Shi, H., Lu, L., Yin, M., Zhong, C., & Yang, F. (2023). Joint few-shot registration and segmentation self-training of 3D medical images. Biomedical Signal Processing and Control, 80. doi:https://doi.org/10.1016/j.bspc.2022.104294

    Publication Citation

    Roth HR, Lu L, Farag A, Shin H-C, Liu J, Turkbey EB, Summers RM. DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation. N. Navab et al. (Eds.): MICCAI 2015, Part I, LNCS 9349, pp. 556–564, 2015.  (arXiv link) https://doi.org/10.1007/978-3-319-24553-9_68

    TCIA Citation

    Clark, K., Vendt, B., Smith, K., Freymann, J., Kirby, J., Koppel, P., Moore, S., Phillips, S., Maffitt, D., Pringle, M., Tarbox, L., & Prior, F. (2013). The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository. In Journal of Digital Imaging (Vol. 26, Issue 6, pp. 1045–1057). Springer Science and Business Media LLC. https://doi.org/10.1007/s10278-013-9622-7

    Previous Versions

    Version 1: Updated 2015/12/29

    Title Data Type Format Access Points Studies Series Images License
    Images DICOM
    Manual Annotations
    Analysis Results Using This Collection