CPTAC-PDA-Tumor-Annotations | Annotations for The Clinical Proteomic Tumor Analysis Consortium Pancreatic Ductal Adenocarcinoma Collection
DOI: 10.7937/BW9V-BX61 | Data Citation Required | 39 Views | 3 Citations | Analysis Result
Location | Subjects | Size | Updated | |||
---|---|---|---|---|---|---|
Ductal Adenocarcinoma | Pancreas | 103 | Tumor segmentations, Seed points | 2023/07/24 |
Summary
This dataset contains image annotations derived from “The Clinical Proteomic Tumor Analysis Consortium Pancreatic Ductal Adenocarcinoma Collection (CPTAC-PDA)”. This dataset was generated as part of a National Cancer Institute project to augment images from The Cancer Imaging Archive with tumor annotations that will improve their value for cancer researchers and artificial intelligence experts. For each patient, all scans were reviewed to identify and annotate the clinically relevant time points and sequences/series. Scans were initially annotated by an international team of radiologists holding MBBS degrees or higher, which were then reviewed by US-based board-certified radiologists to ensure accuracy. In a typical patient all available time points were annotated. The following annotation rules were followed: At each time point:Annotation Protocol
Important supplementary information and sample code
Data Access
Version 1: Updated 2023/07/24
Title | Data Type | Format | Access Points | Subjects | License | |||
---|---|---|---|---|---|---|---|---|
CPTAC-PDA Annotations - Segmentations, Seed Points, and Negative Findings Assessments | RTSTRUCT | DICOM | Download requires NBIA Data Retriever |
103 | 119 | 534 | 534 | CC BY 4.0 |
CPTAC-PDA Annotation Metadata | Classification, Measurement | CSV | CC BY 4.0 |
Collections Used In This Analysis Result
Title | Data Type | Format | Access Points | Subjects | License | |||
---|---|---|---|---|---|---|---|---|
Original CPTAC-PDA Images used to create Segmentations and Seed Points | CT, MR | DICOM | Requires NBIA Data Retriever |
99 | 106 | 170 | 34,622 | CC BY 4.0 |
Original CPTAC-PDA Images used to create Negative Assessment reports | CT, MR | DICOM | Requires NBIA Data Retriever |
16 | 18 | 18 | 2,905 | CC BY 4.0 |
Additional Resources For This Dataset
- The NCI Cancer Research Data Commons (CRDC) provides access to proteomic, genomic and clinical data related to these subjects.
- Imaging Data Commons (IDC) (Imaging Data)
- Proteomic Data Commons (PDC) (Proteomic & Clinical Data)
- Genomic Data Commons (GDC) (Genomic & Clinical Data)
- Jupyter notebook demonstrating how to use the NBIA Data Retriever Command-Line Interface application and REST API to access these data
- Instructions for Visualizing these data in 3D Slicer
Citations & Data Usage Policy
Data Citation Required: Users must abide by the TCIA Data Usage Policy and Restrictions. Attribution must include the following citation, including the Digital Object Identifier:
Data Citation |
|
Rozenfeld, M., & Jordan, P. (2023). Annotations for The Clinical Proteomic Tumor Analysis Consortium Pancreatic Ductal Adenocarcinoma Collection (CPTAC-PDA-Tumor-Annotations) (Version 1) [Data set]. The Cancer Imaging Archive. https://doi.org/10.7937/BW9V-BX61 |
Related Publications
Publications by the Dataset Authors
The authors recommended the following as the best source of additional information about this dataset:
Research Community Publications
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